J3_4V49_023

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

UC*GUUAAG*CAUCA

Length

13 nucleotides

Bulged bases

4V49|1|B0|U|2808, 4V49|1|B0|A|2810

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V49_023 not in the Motif Atlas

Homologous match to J3_7A0S_013

Geometric discrepancy: 0.2856

The information below is about J3_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V49|1|B0|U|2789
4V49|1|B0|C|2790
*
4V49|1|B0|G|2806
4V49|1|B0|U|2807
4V49|1|B0|U|2808
4V49|1|B0|A|2809
4V49|1|B0|A|2810
4V49|1|B0|G|2811
*
4V49|1|B0|C|2857
4V49|1|B0|A|2858
4V49|1|B0|U|2859
4V49|1|B0|C|2860
4V49|1|B0|A|2861

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BB

50S ribosomal protein L3

Chain BL

50S ribosomal protein L17

Chain BN

50S ribosomal protein L19

Chain BZ

50S ribosomal protein L32