J3_4V49_025

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V49|1|AA|C|48, 4V49|1|AA|A|50, 4V49|1|AA|A|51

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V49_025 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0945

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V49|1|AA|G|46
4V49|1|AA|C|47
4V49|1|AA|C|48
4V49|1|AA|U|49
4V49|1|AA|A|50
4V49|1|AA|A|51
4V49|1|AA|G|52
*
4V49|1|AA|U|359
4V49|1|AA|A|360
4V49|1|AA|G|361
4V49|1|AA|G|362
4V49|1|AA|A|363
4V49|1|AA|A|364
4V49|1|AA|U|365
4V49|1|AA|C|366
4V49|1|AA|U|367
*
4V49|1|AA|A|393
4V49|1|AA|G|394
4V49|1|AA|C|395

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16