3D structure

PDB id
4V4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.
Experimental method
X-RAY DIFFRACTION
Resolution
3.71 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
4V4I|1|y|U|1240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4I_025 not in the Motif Atlas
Homologous match to J3_5J7L_011
Geometric discrepancy: 0.4476
The information below is about J3_5J7L_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4V4I|1|y|C|1237
4V4I|1|y|A|1238
4V4I|1|y|A|1239
4V4I|1|y|U|1240
4V4I|1|y|G|1241
*
4V4I|1|y|C|1296
4V4I|1|y|C|1297
4V4I|1|y|C|1298
4V4I|1|y|A|1299
4V4I|1|y|G|1300
4V4I|1|y|U|1301
4V4I|1|y|U|1302
4V4I|1|y|C|1303
*
4V4I|1|y|G|1334
4V4I|1|y|C|1335
4V4I|1|y|C|1336
4V4I|1|y|G|1337

Current chains

Chain y
16S SMALL SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain h
30S ribosomal protein S7
Chain n
30S ribosomal protein S13
Chain v
30S ribosomal protein Thx

Coloring options:


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