J3_4V4I_027
3D structure
- PDB id
- 4V4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.71 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4V4I|1|w|U|448, 4V4I|1|w|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4I_027 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.217
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V4I|1|w|C|32
4V4I|1|w|U|33
4V4I|1|w|C|34
4V4I|1|w|G|35
*
4V4I|1|w|C|445
4V4I|1|w|G|446
4V4I|1|w|A|447
4V4I|1|w|U|448
4V4I|1|w|A|449
4V4I|1|w|G|450
4V4I|1|w|C|451
4V4I|1|w|G|452
4V4I|1|w|C|453
4V4I|1|w|A|454
4V4I|1|w|C|455
4V4I|1|w|C|456
4V4I|1|w|A|457
4V4I|1|w|G|458
4V4I|1|w|U|459
4V4I|1|w|A|460
4V4I|1|w|C|461
*
4V4I|1|w|G|468
4V4I|1|w|G|469
4V4I|1|w|A|470
4V4I|1|w|A|471
4V4I|1|w|A|472
4V4I|1|w|G|473
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L23
- Chain Z
- 50S ribosomal protein L34
Coloring options: