J3_4V4J_013
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 4V4J|1|w|G|2833, 4V4J|1|w|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4J_013 not in the Motif Atlas
- Homologous match to J3_7A0S_013
- Geometric discrepancy: 0.5059
- The information below is about J3_7A0S_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V4J|1|w|C|2814
4V4J|1|w|C|2815
*
4V4J|1|w|G|2831
4V4J|1|w|U|2832
4V4J|1|w|G|2833
4V4J|1|w|G|2834
4V4J|1|w|A|2835
4V4J|1|w|U|2836
*
4V4J|1|w|A|2882
4V4J|1|w|A|2883
4V4J|1|w|U|2884
4V4J|1|w|C|2885
4V4J|1|w|G|2886
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L17
- Chain N
- 50S ribosomal protein L19
- Chain Y
- 50S ribosomal protein L32
Coloring options: