3D structure

PDB id
4V4J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.83 Å

Loop

Sequence
CUAG*CGAAG*CGUUAAG
Length
16 nucleotides
Bulged bases
4V4J|1|y|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4J_018 not in the Motif Atlas
Homologous match to J3_6CZR_018
Geometric discrepancy: 0.2592
The information below is about J3_6CZR_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.3
Basepair signature
cWW-tSH-F-tWW-tHS-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

4V4J|1|y|C|826
4V4J|1|y|U|827
4V4J|1|y|A|828
4V4J|1|y|G|829
*
4V4J|1|y|C|857
4V4J|1|y|G|858
4V4J|1|y|A|859
4V4J|1|y|A|860
4V4J|1|y|G|861
*
4V4J|1|y|C|868
4V4J|1|y|G|869
4V4J|1|y|U|870
4V4J|1|y|U|871
4V4J|1|y|A|872
4V4J|1|y|A|873
4V4J|1|y|G|874

Current chains

Chain y
16S RNA

Nearby chains

Chain 3
MRNA
Chain c
30S ribosomal protein S2
Chain f
30S ribosomal protein S5
Chain i
30S ribosomal protein S8

Coloring options:


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