J3_4V4J_026
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 4V4J|1|y|U|1240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4J_026 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.3904
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V4J|1|y|C|1237
4V4J|1|y|A|1238
4V4J|1|y|A|1239
4V4J|1|y|U|1240
4V4J|1|y|G|1241
*
4V4J|1|y|C|1296
4V4J|1|y|C|1297
4V4J|1|y|C|1298
4V4J|1|y|A|1299
4V4J|1|y|G|1300
4V4J|1|y|U|1301
4V4J|1|y|U|1302
4V4J|1|y|C|1303
*
4V4J|1|y|G|1334
4V4J|1|y|C|1335
4V4J|1|y|C|1336
4V4J|1|y|G|1337
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain h
- 30S ribosomal protein S7
- Chain n
- 30S ribosomal protein S13
- Chain v
- 30S ribosomal protein Thx
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