J3_4V4J_027
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 4V4J|1|w|U|504, 4V4J|1|w|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4J_027 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2367
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V4J|1|w|G|30
4V4J|1|w|C|31
*
4V4J|1|w|G|474
4V4J|1|w|U|475
4V4J|1|w|G|476
4V4J|1|w|A|477
4V4J|1|w|A|478
4V4J|1|w|A|479
4V4J|1|w|A|480
4V4J|1|w|G|481
4V4J|1|w|A|482
4V4J|1|w|A|483
4V4J|1|w|C|484
*
4V4J|1|w|G|496
4V4J|1|w|A|497
4V4J|1|w|G|498
4V4J|1|w|U|499
4V4J|1|w|G|500
4V4J|1|w|A|501
4V4J|1|w|A|502
4V4J|1|w|A|503
4V4J|1|w|U|504
4V4J|1|w|A|505
4V4J|1|w|G|506
4V4J|1|w|A|507
4V4J|1|w|G|508
4V4J|1|w|C|509
4V4J|1|w|C|510
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain O
- 50S ribosomal protein L20
- Chain Q
- 50S ribosomal protein L22
- Chain S
- 50S ribosomal protein L24
Coloring options: