3D structure

PDB id
4V4J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.83 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
4V4J|1|y|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4J_036 not in the Motif Atlas
Homologous match to J3_4LFB_016
Geometric discrepancy: 0.2891
The information below is about J3_4LFB_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

4V4J|1|y|C|990
4V4J|1|y|U|991
4V4J|1|y|U|992
4V4J|1|y|G|993
4V4J|1|y|A|994
4V4J|1|y|C|995
4V4J|1|y|A|996
4V4J|1|y|U|997
*
4V4J|1|y|A|1044
4V4J|1|y|C|1045
4V4J|1|y|A|1046
4V4J|1|y|G|1047
*
4V4J|1|y|C|1210
4V4J|1|y|U|1211
4V4J|1|y|U|1212
4V4J|1|y|A|1213
4V4J|1|y|C|1214
4V4J|1|y|G|1215

Current chains

Chain y
16S RNA

Nearby chains

Chain o
30S ribosomal protein S14 type Z

Coloring options:


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