J3_4V4P_010

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

4V4P|1|AA|G|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4P_010 not in the Motif Atlas

Homologous match to J3_9DFE_019

Geometric discrepancy: 0.3048

The information below is about J3_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V4P|1|AA|C|2814
4V4P|1|AA|C|2815
*
4V4P|1|AA|G|2831
4V4P|1|AA|U|2832
4V4P|1|AA|G|2833
4V4P|1|AA|G|2834
4V4P|1|AA|A|2835
4V4P|1|AA|U|2836
*
4V4P|1|AA|A|2882
4V4P|1|AA|A|2883
4V4P|1|AA|U|2884
4V4P|1|AA|C|2885
4V4P|1|AA|G|2886

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L17

Chain A5

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3