J3_4V4P_014

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V4P|1|BA|U|871, 4V4P|1|BA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4P_014 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.155

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

4V4P|1|BA|C|826
4V4P|1|BA|U|827
4V4P|1|BA|A|828
4V4P|1|BA|G|829
*
4V4P|1|BA|C|857
4V4P|1|BA|G|858
4V4P|1|BA|A|859
4V4P|1|BA|A|860
4V4P|1|BA|G|861
*
4V4P|1|BA|C|868
4V4P|1|BA|G|869
4V4P|1|BA|U|870
4V4P|1|BA|U|871
4V4P|1|BA|A|872
4V4P|1|BA|A|873
4V4P|1|BA|G|874

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BE

30S ribosomal protein S2

Chain BK

30S ribosomal protein S8