J3_4V4P_031

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V4P|1|BA|A|50, 4V4P|1|BA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4P_031 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1489

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V4P|1|BA|G|46
4V4P|1|BA|C|47
4V4P|1|BA|C|48
4V4P|1|BA|U|49
4V4P|1|BA|A|50
4V4P|1|BA|A|51
4V4P|1|BA|G|52
*
4V4P|1|BA|U|359
4V4P|1|BA|A|360
4V4P|1|BA|G|361
4V4P|1|BA|G|362
4V4P|1|BA|A|363
4V4P|1|BA|A|364
4V4P|1|BA|U|365
4V4P|1|BA|C|366
4V4P|1|BA|U|367
*
4V4P|1|BA|A|393
4V4P|1|BA|G|394
4V4P|1|BA|C|395

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BO

30S ribosomal protein S12

Chain BS

30S ribosomal protein S16