J3_4V4S_046

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4S_046 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1793

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V4S|1|BA|C|698
4V4S|1|BA|A|699
4V4S|1|BA|G|700
*
4V4S|1|BA|C|732
4V4S|1|BA|G|733
4V4S|1|BA|A|734
4V4S|1|BA|A|735
4V4S|1|BA|C|736
*
4V4S|1|BA|G|760
4V4S|1|BA|A|761
4V4S|1|BA|U|762
4V4S|1|BA|G|763

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2