J3_4V4V_003

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V4V|1|AA|U|871, 4V4V|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4V_003 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0744

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V4V|1|AA|C|826
4V4V|1|AA|U|827
4V4V|1|AA|U|828
4V4V|1|AA|G|829
*
4V4V|1|AA|C|857
4V4V|1|AA|G|858
4V4V|1|AA|G|859
4V4V|1|AA|A|860
4V4V|1|AA|G|861
*
4V4V|1|AA|C|868
4V4V|1|AA|G|869
4V4V|1|AA|U|870
4V4V|1|AA|U|871
4V4V|1|AA|A|872
4V4V|1|AA|A|873
4V4V|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal subunit protein S2

Chain AH

30S ribosomal subunit protein S8