3D structure

PDB id
4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4V4V|1|B0|U|34, 4V4V|1|B0|U|448, 4V4V|1|B0|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4V_024 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.258
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4V4V|1|B0|C|32
4V4V|1|B0|C|33
4V4V|1|B0|U|34
4V4V|1|B0|G|35
*
4V4V|1|B0|C|445
4V4V|1|B0|G|446
4V4V|1|B0|A|447
4V4V|1|B0|U|448
4V4V|1|B0|A|449
4V4V|1|B0|G|450
4V4V|1|B0|U|451
4V4V|1|B0|G|452
4V4V|1|B0|A|453
4V4V|1|B0|A|454
4V4V|1|B0|C|455
4V4V|1|B0|C|456
4V4V|1|B0|A|457
4V4V|1|B0|G|458
4V4V|1|B0|U|459
4V4V|1|B0|A|460
4V4V|1|B0|C|461
*
4V4V|1|B0|G|468
4V4V|1|B0|G|469
4V4V|1|B0|A|470
4V4V|1|B0|A|471
4V4V|1|B0|A|472
4V4V|1|B0|G|473

Current chains

Chain B0
23S ribosomal RNA

Nearby chains

Chain BC
50S ribosomal protein L4
Chain BO
50S RIBOSOMAL PROTEIN L20
Chain BR
50S ribosomal protein L23

Coloring options:


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