3D structure

PDB id
4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GUCAAC
Length
21 nucleotides
Bulged bases
4V4V|1|B0|A|2388, 4V4V|1|B0|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4V_028 not in the Motif Atlas
Geometric match to J3_4V9F_018
Geometric discrepancy: 0.1036
The information below is about J3_4V9F_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44792.1
Basepair signature
cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
1

Unit IDs

4V4V|1|B0|G|2282
4V4V|1|B0|C|2283
4V4V|1|B0|A|2284
*
4V4V|1|B0|U|2384
4V4V|1|B0|C|2385
4V4V|1|B0|A|2386
4V4V|1|B0|U|2387
4V4V|1|B0|A|2388
4V4V|1|B0|G|2389
4V4V|1|B0|U|2390
4V4V|1|B0|G|2391
4V4V|1|B0|A|2392
4V4V|1|B0|U|2393
4V4V|1|B0|C|2394
4V4V|1|B0|C|2395
*
4V4V|1|B0|G|2421
4V4V|1|B0|U|2423
4V4V|1|B0|C|2424
4V4V|1|B0|A|2425
4V4V|1|B0|A|2426
4V4V|1|B0|C|2427

Current chains

Chain B0
23S ribosomal RNA

Nearby chains

Chain AW
Transfer RNA; tRNA
Chain B1
50S ribosomal protein L33
Chain BJ
50S ribosomal protein L15
Chain BU
50S ribosomal protein L27

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4031 s
Application loaded.