J3_4V4V_028
3D structure
- PDB id
- 4V4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GUCAAC
- Length
- 21 nucleotides
- Bulged bases
- 4V4V|1|B0|A|2388, 4V4V|1|B0|A|2426
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4V_028 not in the Motif Atlas
- Geometric match to J3_4V9F_018
- Geometric discrepancy: 0.1036
- The information below is about J3_4V9F_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44792.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V4V|1|B0|G|2282
4V4V|1|B0|C|2283
4V4V|1|B0|A|2284
*
4V4V|1|B0|U|2384
4V4V|1|B0|C|2385
4V4V|1|B0|A|2386
4V4V|1|B0|U|2387
4V4V|1|B0|A|2388
4V4V|1|B0|G|2389
4V4V|1|B0|U|2390
4V4V|1|B0|G|2391
4V4V|1|B0|A|2392
4V4V|1|B0|U|2393
4V4V|1|B0|C|2394
4V4V|1|B0|C|2395
*
4V4V|1|B0|G|2421
4V4V|1|B0|U|2423
4V4V|1|B0|C|2424
4V4V|1|B0|A|2425
4V4V|1|B0|A|2426
4V4V|1|B0|C|2427
Current chains
- Chain B0
- 23S ribosomal RNA
Nearby chains
- Chain AW
- Transfer RNA; tRNA
- Chain B1
- 50S ribosomal protein L33
- Chain BJ
- 50S ribosomal protein L15
- Chain BU
- 50S ribosomal protein L27
Coloring options: