J3_4V4W_002

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGG*CUUGA*UGACG

Length

13 nucleotides

Bulged bases

4V4W|1|AA|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4W_002 not in the Motif Atlas

Homologous match to J3_5J7L_051

Geometric discrepancy: 0.2911

The information below is about J3_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.4

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V4W|1|AA|C|586
4V4W|1|AA|G|587
4V4W|1|AA|G|588
*
4V4W|1|AA|C|651
4V4W|1|AA|U|652
4V4W|1|AA|U|653
4V4W|1|AA|G|654
4V4W|1|AA|A|655
*
4V4W|1|AA|U|751
4V4W|1|AA|G|752
4V4W|1|AA|A|753
4V4W|1|AA|C|754
4V4W|1|AA|G|755

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal subunit protein S8

Chain AO

30S ribosomal subunit protein S15

Chain AQ

30S ribosomal subunit protein S17