J3_4V4W_011

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

4V4W|1|B0|A|1608, 4V4W|1|B0|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4W_011 not in the Motif Atlas

Geometric match to J3_4V9F_006

Geometric discrepancy: 0.2462

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

4V4W|1|B0|C|1306
4V4W|1|B0|A|1307
4V4W|1|B0|A|1308
4V4W|1|B0|G|1309
*
4V4W|1|B0|C|1605
4V4W|1|B0|C|1606
4V4W|1|B0|C|1607
4V4W|1|B0|A|1608
4V4W|1|B0|A|1609
4V4W|1|B0|A|1610
4V4W|1|B0|C|1611
*
4V4W|1|B0|G|1620
4V4W|1|B0|U|1621
4V4W|1|B0|G|1622

Current chains

Chain B0

23S ribosomal RNA

Nearby chains