J3_4V5A_015

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAAAC*GGGUCGGG*CCG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5A_015 not in the Motif Atlas

Geometric match to J3_4V9F_001

Geometric discrepancy: 0.3794

The information below is about J3_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_96248.1

Basepair signature

cWW-tHW-F-tHS-cSS-cWW-F-cWW-F-F

Number of instances in this motif group

2

Unit IDs

4V5A|1|BA|U|269
4V5A|1|BA|A|270
4V5A|1|BA|A|271
4V5A|1|BA|A|271|||A
4V5A|1|BA|C|271|||B
*
4V5A|1|BA|G|271|||V
4V5A|1|BA|G|271|||W
4V5A|1|BA|G|271|||X
4V5A|1|BA|U|271|||Y
4V5A|1|BA|C|271|||Z
4V5A|1|BA|G|272
4V5A|1|BA|G|272|||B
4V5A|1|BA|G|272|||C
*
4V5A|1|BA|C|365
4V5A|1|BA|C|366
4V5A|1|BA|G|370

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BI

50S RIBOSOMAL PROTEIN L9