J3_4V5A_037

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4V5A|1|CA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5A_037 not in the Motif Atlas

Geometric match to J3_4LFB_009

Geometric discrepancy: 0.1659

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

4V5A|1|CA|C|1237
4V5A|1|CA|A|1238
4V5A|1|CA|A|1239
4V5A|1|CA|U|1240
4V5A|1|CA|G|1241
*
4V5A|1|CA|C|1296
4V5A|1|CA|C|1297
4V5A|1|CA|C|1298
4V5A|1|CA|A|1299
4V5A|1|CA|G|1300
4V5A|1|CA|U|1301
4V5A|1|CA|U|1302
4V5A|1|CA|C|1303
*
4V5A|1|CA|G|1334
4V5A|1|CA|C|1335
4V5A|1|CA|C|1336
4V5A|1|CA|G|1337

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S7

Chain CM

30S RIBOSOMAL PROTEIN S13

Chain CU

30S RIBOSOMAL PROTEIN THX

Chain CW

Transfer RNA; tRNA