J3_4V5B_009

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CAUC*GUAU*AUUUAAAG

Length

16 nucleotides

Bulged bases

4V5B|1|AB|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5B_009 not in the Motif Atlas

Geometric match to J3_4V9F_009

Geometric discrepancy: 0.3055

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V5B|1|AB|C|2517
4V5B|1|AB|A|2518
4V5B|1|AB|U|2519
4V5B|1|AB|C|2520
*
4V5B|1|AB|G|2545
4V5B|1|AB|U|2546
4V5B|1|AB|A|2547
4V5B|1|AB|U|2548
*
4V5B|1|AB|A|2560
4V5B|1|AB|U|2561
4V5B|1|AB|U|2562
4V5B|1|AB|U|2563
4V5B|1|AB|A|2564
4V5B|1|AB|A|2565
4V5B|1|AB|A|2566
4V5B|1|AB|G|2567

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain A4

50S RIBOSOMAL PROTEIN L36

Chain AK

50S RIBOSOMAL PROTEIN L14