J3_4V5H_021

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

4V5H|1|BB|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5H_021 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1618

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4V5H|1|BB|C|1306
4V5H|1|BB|A|1307
4V5H|1|BB|A|1308
4V5H|1|BB|G|1309
*
4V5H|1|BB|C|1605
4V5H|1|BB|C|1606
4V5H|1|BB|C|1607
4V5H|1|BB|A|1608
4V5H|1|BB|A|1609
4V5H|1|BB|A|1610
4V5H|1|BB|C|1611
*
4V5H|1|BB|G|1620
4V5H|1|BB|U|1621
4V5H|1|BB|G|1622

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B6

50S RIBOSOMAL PROTEIN L34