J3_4V5M_004

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V5M|1|AA|U|871, 4V5M|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5M_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0768

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V5M|1|AA|C|826
4V5M|1|AA|U|827
4V5M|1|AA|A|828
4V5M|1|AA|G|829
*
4V5M|1|AA|C|857
4V5M|1|AA|G|858
4V5M|1|AA|A|859
4V5M|1|AA|A|860
4V5M|1|AA|G|861
*
4V5M|1|AA|C|868
4V5M|1|AA|G|869
4V5M|1|AA|U|870
4V5M|1|AA|U|871
4V5M|1|AA|A|872
4V5M|1|AA|A|873
4V5M|1|AA|G|874

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AH

30S RIBOSOMAL PROTEIN S8