J3_4V5M_028

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V5M|1|AA|C|48, 4V5M|1|AA|A|50, 4V5M|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5M_028 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0837

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5M|1|AA|G|46
4V5M|1|AA|C|47
4V5M|1|AA|C|48
4V5M|1|AA|U|49
4V5M|1|AA|A|50
4V5M|1|AA|A|51
4V5M|1|AA|G|52
*
4V5M|1|AA|U|359
4V5M|1|AA|A|360
4V5M|1|AA|G|361
4V5M|1|AA|G|362
4V5M|1|AA|A|363
4V5M|1|AA|A|364
4V5M|1|AA|U|365
4V5M|1|AA|C|366
4V5M|1|AA|U|367
*
4V5M|1|AA|A|393
4V5M|1|AA|G|394
4V5M|1|AA|C|395

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AY

ELONGATION FACTOR G