3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
4V5M|1|AA|U|1212, 4V5M|1|AA|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V5M_030 not in the Motif Atlas
Homologous match to J3_4LFB_016
Geometric discrepancy: 0.1403
The information below is about J3_4LFB_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

4V5M|1|AA|C|990
4V5M|1|AA|U|991
4V5M|1|AA|U|992
4V5M|1|AA|G|993
4V5M|1|AA|A|994
4V5M|1|AA|C|995
4V5M|1|AA|A|996
4V5M|1|AA|U|997
*
4V5M|1|AA|A|1044
4V5M|1|AA|C|1045
4V5M|1|AA|A|1046
4V5M|1|AA|G|1047
*
4V5M|1|AA|C|1210
4V5M|1|AA|U|1211
4V5M|1|AA|U|1212
4V5M|1|AA|A|1213
4V5M|1|AA|C|1214
4V5M|1|AA|G|1215

Current chains

Chain AA
16S RRNA

Nearby chains

Chain AN
30S RIBOSOMAL PROTEIN S14 TYPE Z

Coloring options:


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