J3_4V5O_009
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- CAAGAC*GGGUG*CUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 4V5O|1|AA|G|1416
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5O_009 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.2282
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V5O|1|AA|C|1187
4V5O|1|AA|A|1188
4V5O|1|AA|A|1189
4V5O|1|AA|G|1190
4V5O|1|AA|A|1191
4V5O|1|AA|C|1192
*
4V5O|1|AA|G|1235
4V5O|1|AA|G|1236
4V5O|1|AA|G|1237
4V5O|1|AA|U|1238
4V5O|1|AA|G|1239
*
4V5O|1|AA|C|1413
4V5O|1|AA|U|1414
4V5O|1|AA|A|1415
4V5O|1|AA|G|1416
4V5O|1|AA|A|1417
4V5O|1|AA|C|1418
4V5O|1|AA|G|1419
Current chains
- Chain AA
- 18S RRNA
Nearby chains
- Chain A7
- PLECTIN/S10 DOMAIN CONTAINING PROTEIN
- Chain A9
- RPS31E
- Chain AN
- RPS29E
- Chain AU
- RIBOSOMAL PROTEIN L7AE CONTAINING PROTEIN
Coloring options: