J3_4V5O_013
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- CAAUG*CGUGUUAG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 4V5O|1|AA|U|1444
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5O_013 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.5099
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V5O|1|AA|C|1441
4V5O|1|AA|A|1442
4V5O|1|AA|A|1443
4V5O|1|AA|U|1444
4V5O|1|AA|G|1445
*
4V5O|1|AA|C|1505
4V5O|1|AA|G|1506
4V5O|1|AA|U|1507
4V5O|1|AA|G|1508
4V5O|1|AA|U|1509
4V5O|1|AA|U|1510
4V5O|1|AA|A|1511
4V5O|1|AA|G|1512
*
4V5O|1|AA|C|1543
4V5O|1|AA|G|1544
4V5O|1|AA|A|1545
4V5O|1|AA|G|1546
Current chains
- Chain AA
- 18S RRNA
Nearby chains
- Chain A8
- RPS25E
- Chain AG
- RIBOSOMAL PROTEIN S7 CONTAINING PROTEIN
- Chain AM
- RPS18E
- Chain AT
- RPS19E
- Chain BF
- EIF1
Coloring options: