J3_4V5O_014

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

AUAUUAAC*GAAGAAAAU*AGU

Length

20 nucleotides

Bulged bases

4V5O|1|BA|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5O_014 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.1422

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

4V5O|1|BA|A|40
4V5O|1|BA|U|41
4V5O|1|BA|A|42
4V5O|1|BA|U|43
4V5O|1|BA|U|44
4V5O|1|BA|A|45
4V5O|1|BA|A|46
4V5O|1|BA|C|47
*
4V5O|1|BA|G|423
4V5O|1|BA|A|424
4V5O|1|BA|A|425
4V5O|1|BA|G|426
4V5O|1|BA|A|427
4V5O|1|BA|A|428
4V5O|1|BA|A|429
4V5O|1|BA|A|430
4V5O|1|BA|U|431
*
4V5O|1|BA|A|456
4V5O|1|BA|G|457
4V5O|1|BA|U|458

Current chains

Chain BA

18S RRNA

Nearby chains

Chain BD

RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN

Chain BL

40S RIBOSOMAL PROTEIN S12