J3_4V5O_016
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 4V5O|1|BA|U|842
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5O_016 not in the Motif Atlas
- Homologous match to J3_8C3A_034
- Geometric discrepancy: 0.1656
- The information below is about J3_8C3A_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.2
- Basepair signature
- cWW-tSH-cWW-tHW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
4V5O|1|BA|U|627
4V5O|1|BA|G|628
4V5O|1|BA|A|629
*
4V5O|1|BA|U|839
4V5O|1|BA|A|840
4V5O|1|BA|A|841
4V5O|1|BA|U|842
4V5O|1|BA|A|843
4V5O|1|BA|G|844
*
4V5O|1|BA|C|940
4V5O|1|BA|A|941
4V5O|1|BA|U|942
4V5O|1|BA|U|943
4V5O|1|BA|A|944
Current chains
- Chain BA
- 18S RRNA
Nearby chains
- Chain B3
- RPS7E
- Chain B6
- RPS27E
- Chain BH
- RIBOSOMAL PROTEIN S8 CONTAINING PROTEIN
- Chain BL
- 40S RIBOSOMAL PROTEIN S12
- Chain BO
- RPS13E
- Chain BQ
- RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN
Coloring options: