J3_4V61_002
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- UGG*CUGGA*UGACA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V61_002 not in the Motif Atlas
- Homologous match to J3_5J7L_051
- Geometric discrepancy: 0.1836
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V61|1|AA|U|534
4V61|1|AA|G|535
4V61|1|AA|G|536
*
4V61|1|AA|C|599
4V61|1|AA|U|600
4V61|1|AA|G|601
4V61|1|AA|G|602
4V61|1|AA|A|603
*
4V61|1|AA|U|699
4V61|1|AA|G|700
4V61|1|AA|A|701
4V61|1|AA|C|702
4V61|1|AA|A|703
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AH
- Ribosomal Protein S8
- Chain AL
- Ribosomal Protein S12
- Chain AO
- Ribosomal Protein S15
- Chain AQ
- Ribosomal Protein S17
Coloring options: