J3_4V61_003

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CUAG*UUGUAG*CGUUAAG

Length

17 nucleotides

Bulged bases

4V61|1|AA|U|806, 4V61|1|AA|U|820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V61_003 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1339

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V61|1|AA|C|774
4V61|1|AA|U|775
4V61|1|AA|A|776
4V61|1|AA|G|777
*
4V61|1|AA|U|805
4V61|1|AA|U|806
4V61|1|AA|G|807
4V61|1|AA|U|808
4V61|1|AA|A|809
4V61|1|AA|G|810
*
4V61|1|AA|C|817
4V61|1|AA|G|818
4V61|1|AA|U|819
4V61|1|AA|U|820
4V61|1|AA|A|821
4V61|1|AA|A|822
4V61|1|AA|G|823

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

Ribosomal Protein S2

Chain AH

Ribosomal Protein S8

Chain AU

Ribosomal Protein S21