J3_4V61_012

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4V61|1|AA|U|1188, 4V61|1|AA|U|1250

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V61_012 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.2313

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V61|1|AA|C|1185
4V61|1|AA|A|1186
4V61|1|AA|A|1187
4V61|1|AA|U|1188
4V61|1|AA|G|1189
*
4V61|1|AA|C|1244
4V61|1|AA|U|1245
4V61|1|AA|C|1246
4V61|1|AA|A|1247
4V61|1|AA|G|1248
4V61|1|AA|U|1249
4V61|1|AA|U|1250
4V61|1|AA|C|1251
*
4V61|1|AA|G|1282
4V61|1|AA|C|1283
4V61|1|AA|C|1284
4V61|1|AA|G|1285

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

Ribosomal Protein S7

Chain AM

Ribosomal Protein S13