J3_4V61_015

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V61_015 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.1708

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

4V61|1|BA|G|1083
4V61|1|BA|G|1084
4V61|1|BA|A|1085
*
4V61|1|BA|U|1109
4V61|1|BA|U|1110
4V61|1|BA|G|1111
4V61|1|BA|A|1112
4V61|1|BA|A|1113
4V61|1|BA|A|1114
4V61|1|BA|G|1115
*
4V61|1|BA|C|1130
4V61|1|BA|A|1131
4V61|1|BA|C|1132

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

Ribosomal Protein L36

Chain BI

Ribosomal Protein L6

Chain BK

Ribosomal Protein L11