J3_4V68_004

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V68|1|AA|U|871, 4V68|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V68_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0726

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V68|1|AA|C|826
4V68|1|AA|U|827
4V68|1|AA|A|828
4V68|1|AA|G|829
*
4V68|1|AA|C|857
4V68|1|AA|G|858
4V68|1|AA|A|859
4V68|1|AA|A|860
4V68|1|AA|G|861
*
4V68|1|AA|C|868
4V68|1|AA|G|869
4V68|1|AA|U|870
4V68|1|AA|U|871
4V68|1|AA|A|872
4V68|1|AA|A|873
4V68|1|AA|G|874

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8