J3_4V68_012

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4V68|1|AA|U|1240, 4V68|1|AA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V68_012 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1002

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

4V68|1|AA|C|1237
4V68|1|AA|A|1238
4V68|1|AA|A|1239
4V68|1|AA|U|1240
4V68|1|AA|G|1241
*
4V68|1|AA|C|1296
4V68|1|AA|C|1297
4V68|1|AA|C|1298
4V68|1|AA|A|1299
4V68|1|AA|G|1300
4V68|1|AA|U|1301
4V68|1|AA|U|1302
4V68|1|AA|C|1303
*
4V68|1|AA|G|1334
4V68|1|AA|C|1335
4V68|1|AA|C|1336
4V68|1|AA|G|1337

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13

Chain AU

30S ribosomal protein Thx