J3_4V68_030

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V68|1|AA|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V68_030 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1473

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V68|1|AA|C|990
4V68|1|AA|U|991
4V68|1|AA|U|992
4V68|1|AA|G|993
4V68|1|AA|A|994
4V68|1|AA|C|995
4V68|1|AA|A|996
4V68|1|AA|U|997
*
4V68|1|AA|A|1044
4V68|1|AA|C|1045
4V68|1|AA|A|1046
4V68|1|AA|G|1047
*
4V68|1|AA|C|1210
4V68|1|AA|U|1211
4V68|1|AA|U|1212
4V68|1|AA|A|1213
4V68|1|AA|C|1214
4V68|1|AA|G|1215

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14