3D structure

PDB id
4V69 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ternary complex-bound E.coli 70S ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
6.7 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
4V69|1|AA|U|871
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V69_004 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.1668
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

4V69|1|AA|C|826
4V69|1|AA|U|827
4V69|1|AA|U|828
4V69|1|AA|G|829
*
4V69|1|AA|C|857
4V69|1|AA|G|858
4V69|1|AA|G|859
4V69|1|AA|A|860
4V69|1|AA|G|861
*
4V69|1|AA|C|868
4V69|1|AA|G|869
4V69|1|AA|U|870
4V69|1|AA|U|871
4V69|1|AA|A|872
4V69|1|AA|A|873
4V69|1|AA|G|874

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AB
30S ribosomal protein S2
Chain AH
30S ribosomal protein S8
Chain AU
30S ribosomal protein S21

Coloring options:


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