3D structure

PDB id
4V69 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ternary complex-bound E.coli 70S ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
6.7 Å

Loop

Sequence
GCCUAAC*GGGGAAUAU*AGC
Length
19 nucleotides
Bulged bases
4V69|1|AA|C|48, 4V69|1|AA|A|50, 4V69|1|AA|A|51
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V69_026 not in the Motif Atlas
Homologous match to J3_5J7L_050
Geometric discrepancy: 0.1428
The information below is about J3_5J7L_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V69|1|AA|G|46
4V69|1|AA|C|47
4V69|1|AA|C|48
4V69|1|AA|U|49
4V69|1|AA|A|50
4V69|1|AA|A|51
4V69|1|AA|C|52
*
4V69|1|AA|G|359
4V69|1|AA|G|360
4V69|1|AA|G|361
4V69|1|AA|G|362
4V69|1|AA|A|363
4V69|1|AA|A|364
4V69|1|AA|U|365
4V69|1|AA|A|366
4V69|1|AA|U|367
*
4V69|1|AA|A|393
4V69|1|AA|G|394
4V69|1|AA|C|395

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AL
30S ribosomal protein S12
Chain AP
30S ribosomal protein S16
Chain AY
A/T-site tRNA Phe
Chain AZ
Elongation factor Tu

Coloring options:


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