J3_4V6I_002
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- AUCA*UAACUACUGC*GCAUUU
- Length
- 20 nucleotides
- Bulged bases
- 4V6I|1|CA|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6I_002 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.5522
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76375.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V6I|1|CA|A|881
4V6I|1|CA|U|882
4V6I|1|CA|C|883
4V6I|1|CA|A|884
*
4V6I|1|CA|U|928
4V6I|1|CA|A|929
4V6I|1|CA|A|930
4V6I|1|CA|C|931
4V6I|1|CA|U|932
4V6I|1|CA|A|933
4V6I|1|CA|C|934
4V6I|1|CA|U|935
4V6I|1|CA|G|936
4V6I|1|CA|C|937
*
4V6I|1|CA|G|942
4V6I|1|CA|C|943
4V6I|1|CA|A|944
4V6I|1|CA|U|945
4V6I|1|CA|U|946
4V6I|1|CA|U|947
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AK
- 40S ribosomal protein rpS14 (S11p)
- Chain AO
- 40S ribosomal protein rpS13 (S15p)
- Chain AT
- 40S ribosomal protein rpS21 (S21e)
- Chain AW
- 40S ribosomal protein rpS26 (S26e)
- Chain BB
- 60S ribosomal protein rpL2 (L2p)
- Chain Bm
- 60S ribosomal protein rpL43 (L37ae)
Coloring options: