J3_4V6I_004
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6I_004 not in the Motif Atlas
- Homologous match to J3_8P9A_076
- Geometric discrepancy: 0.4788
- The information below is about J3_8P9A_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V6I|1|CA|C|1161
4V6I|1|CA|C|1162
4V6I|1|CA|A|1163
4V6I|1|CA|G|1164
*
4V6I|1|CA|C|1581
4V6I|1|CA|U|1582
4V6I|1|CA|A|1583
4V6I|1|CA|G|1584
4V6I|1|CA|U|1585
4V6I|1|CA|A|1586
4V6I|1|CA|A|1587
*
4V6I|1|CA|U|1609
4V6I|1|CA|G|1610
4V6I|1|CA|A|1611
4V6I|1|CA|U|1612
4V6I|1|CA|U|1613
4V6I|1|CA|A|1614
4V6I|1|CA|C|1615
4V6I|1|CA|G|1616
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AF
- 40S ribosomal protein rpS5 (S7p)
- Chain AI
- 40S ribosomal protein rpS16 (S9p)
- Chain AJ
- 40S ribosomal protein rpS20 (S10p)
- Chain AY
- 40S ribosomal protein rpS28 (S28e)
Coloring options: