J3_4V6I_010
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 4V6I|1|CA|U|1473
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6I_010 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.3553
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V6I|1|CA|C|1470
4V6I|1|CA|A|1471
4V6I|1|CA|C|1472
4V6I|1|CA|U|1473
4V6I|1|CA|G|1474
*
4V6I|1|CA|C|1533
4V6I|1|CA|G|1534
4V6I|1|CA|U|1535
4V6I|1|CA|G|1536
4V6I|1|CA|C|1537
4V6I|1|CA|U|1538
4V6I|1|CA|G|1539
4V6I|1|CA|G|1540
*
4V6I|1|CA|C|1571
4V6I|1|CA|G|1572
4V6I|1|CA|A|1573
4V6I|1|CA|G|1574
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AF
- 40S ribosomal protein rpS5 (S7p)
- Chain AM
- 40S ribosomal protein rpS18 (S13p)
- Chain AS
- 40S ribosomal protein rpS19 (S19e)
- Chain AV
- 40S ribosomal protein rpS25 (S25e)
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