J3_4V6I_013
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 4V6I|1|DA|A|817, 4V6I|1|DA|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6I_013 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1324
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V6I|1|DA|U|814
4V6I|1|DA|G|815
4V6I|1|DA|A|816
4V6I|1|DA|A|817
4V6I|1|DA|C|818
4V6I|1|DA|U|819
4V6I|1|DA|A|820
*
4V6I|1|DA|U|905
4V6I|1|DA|A|906
4V6I|1|DA|G|907
*
4V6I|1|DA|C|923
4V6I|1|DA|G|924
4V6I|1|DA|A|925
4V6I|1|DA|A|926
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein rpL2 (L2p)
- Chain BP
- 60S ribosomal protein rpL15 (L15e)
- Chain Bl
- 60S ribosomal protein rpL37 (L37e)
- Chain Bo
- 60S ribosomal protein rpL39 (L39e)
Coloring options: