J3_4V6I_025
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 4V6I|1|DA|A|2703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6I_025 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.2392
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V6I|1|DA|C|2664
4V6I|1|DA|U|2665
4V6I|1|DA|C|2666
*
4V6I|1|DA|G|2690
4V6I|1|DA|A|2691
4V6I|1|DA|A|2692
*
4V6I|1|DA|U|2701
4V6I|1|DA|A|2702
4V6I|1|DA|A|2703
4V6I|1|DA|A|2704
4V6I|1|DA|A|2705
4V6I|1|DA|G|2706
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BE
- 60S ribosomal protein rpL11 (L5p)
- Chain BQ
- 60S ribosomal protein rpL5 (L18p)
- Chain BU
- 60S ribosomal protein rpL21 (L21e)
- Chain CB
- Transfer RNA; tRNA
- Chain DC
- 5S ribosomal RNA; 5S rRNA
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