J3_4V6I_026

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

4V6I|1|DA|A|2887, 4V6I|1|DA|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6I_026 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.2084

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

4V6I|1|DA|U|2886
4V6I|1|DA|A|2887
4V6I|1|DA|U|2888
4V6I|1|DA|C|2889
*
4V6I|1|DA|G|2914
4V6I|1|DA|U|2915
4V6I|1|DA|U|2916
*
4V6I|1|DA|A|2930
4V6I|1|DA|C|2931
4V6I|1|DA|U|2932
4V6I|1|DA|A|2933
4V6I|1|DA|A|2934
4V6I|1|DA|U|2935
4V6I|1|DA|A|2936

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BC

60S ribosomal protein rpL3 (L3p)

Chain BM

60S ribosomal protein rpL23 (L14p)