J3_4V6K_009

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

ACUG*CUAAC*GGACAGU

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6K_009 not in the Motif Atlas

Geometric match to J3_9AXU_019

Geometric discrepancy: 0.2683

The information below is about J3_9AXU_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

4V6K|1|AB|A|2090
4V6K|1|AB|C|2091
4V6K|1|AB|U|2092
4V6K|1|AB|G|2093
*
4V6K|1|AB|C|2196
4V6K|1|AB|U|2197
4V6K|1|AB|A|2198
4V6K|1|AB|A|2199
4V6K|1|AB|C|2200
*
4V6K|1|AB|G|2223
4V6K|1|AB|G|2224
4V6K|1|AB|A|2225
4V6K|1|AB|C|2226
4V6K|1|AB|A|2227
4V6K|1|AB|G|2228
4V6K|1|AB|U|2229

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AD

50S ribosomal protein L2

Chain AI

50S ribosomal protein L9

Chain AY

50S ribosomal protein L28