J3_4V6K_027
3D structure
- PDB id
- 4V6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.25 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 4V6K|1|AB|A|504, 4V6K|1|AB|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6K_027 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.1635
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V6K|1|AB|G|30
4V6K|1|AB|C|31
*
4V6K|1|AB|G|474
4V6K|1|AB|C|475
4V6K|1|AB|G|476
4V6K|1|AB|A|477
4V6K|1|AB|A|478
4V6K|1|AB|A|479
4V6K|1|AB|A|480
4V6K|1|AB|G|481
4V6K|1|AB|A|482
4V6K|1|AB|A|483
4V6K|1|AB|C|484
*
4V6K|1|AB|G|496
4V6K|1|AB|A|497
4V6K|1|AB|G|498
4V6K|1|AB|U|499
4V6K|1|AB|G|500
4V6K|1|AB|A|501
4V6K|1|AB|A|502
4V6K|1|AB|A|503
4V6K|1|AB|A|504
4V6K|1|AB|A|505
4V6K|1|AB|G|506
4V6K|1|AB|A|507
4V6K|1|AB|A|508
4V6K|1|AB|C|509
4V6K|1|AB|C|510
Current chains
- Chain AB
- ribosomal RNA 23S
Nearby chains
- Chain AR
- 50S ribosomal protein L20
- Chain AT
- 50S ribosomal protein L22
- Chain AV
- 50S ribosomal protein L24
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