J3_4V6L_025

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

4V6L|1|AA|C|48, 4V6L|1|AA|A|51

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6L_025 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.2378

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V6L|1|AA|G|46
4V6L|1|AA|C|47
4V6L|1|AA|C|48
4V6L|1|AA|U|49
4V6L|1|AA|A|50
4V6L|1|AA|A|51
4V6L|1|AA|C|52
*
4V6L|1|AA|G|359
4V6L|1|AA|G|360
4V6L|1|AA|G|361
4V6L|1|AA|G|362
4V6L|1|AA|A|363
4V6L|1|AA|A|364
4V6L|1|AA|U|365
4V6L|1|AA|A|366
4V6L|1|AA|U|367
*
4V6L|1|AA|A|393
4V6L|1|AA|G|394
4V6L|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

Elongation factor Tu 2

Chain AP

30S ribosomal protein S12

Chain AT

30S ribosomal protein S16