J3_4V6L_031

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V6L|1|BB|A|504, 4V6L|1|BB|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6L_031 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1945

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V6L|1|BB|G|30
4V6L|1|BB|C|31
*
4V6L|1|BB|G|474
4V6L|1|BB|C|475
4V6L|1|BB|G|476
4V6L|1|BB|A|477
4V6L|1|BB|A|478
4V6L|1|BB|A|479
4V6L|1|BB|A|480
4V6L|1|BB|G|481
4V6L|1|BB|A|482
4V6L|1|BB|A|483
4V6L|1|BB|C|484
*
4V6L|1|BB|G|496
4V6L|1|BB|A|497
4V6L|1|BB|G|498
4V6L|1|BB|U|499
4V6L|1|BB|G|500
4V6L|1|BB|A|501
4V6L|1|BB|A|502
4V6L|1|BB|A|503
4V6L|1|BB|A|504
4V6L|1|BB|A|505
4V6L|1|BB|G|506
4V6L|1|BB|A|507
4V6L|1|BB|A|508
4V6L|1|BB|C|509
4V6L|1|BB|C|510

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BR

50S ribosomal protein L20

Chain BT

50S ribosomal protein L22

Chain BV

50S ribosomal protein L24