J3_4V6L_032
3D structure
- PDB id
- 4V6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.2 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4V6L|1|BB|U|34, 4V6L|1|BB|U|448, 4V6L|1|BB|C|456
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6L_032 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.3151
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
4V6L|1|BB|C|32
4V6L|1|BB|C|33
4V6L|1|BB|U|34
4V6L|1|BB|G|35
*
4V6L|1|BB|C|445
4V6L|1|BB|G|446
4V6L|1|BB|A|447
4V6L|1|BB|U|448
4V6L|1|BB|A|449
4V6L|1|BB|G|450
4V6L|1|BB|U|451
4V6L|1|BB|G|452
4V6L|1|BB|A|453
4V6L|1|BB|A|454
4V6L|1|BB|C|455
4V6L|1|BB|C|456
4V6L|1|BB|A|457
4V6L|1|BB|G|458
4V6L|1|BB|U|459
4V6L|1|BB|A|460
4V6L|1|BB|C|461
*
4V6L|1|BB|G|468
4V6L|1|BB|G|469
4V6L|1|BB|A|470
4V6L|1|BB|A|471
4V6L|1|BB|A|472
4V6L|1|BB|G|473
Current chains
- Chain BB
- 50S ribosomal RNA 23S
Nearby chains
- Chain BF
- 50S ribosomal protein L4
- Chain BR
- 50S ribosomal protein L20
- Chain BU
- 50S ribosomal protein L23
- Chain Be
- 50S ribosomal protein L34
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