J3_4V6M_019
3D structure
- PDB id
- 4V6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ribosome-SecYE complex in the membrane environment
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.1 Å
Loop
- Sequence
- GGA*UUUAAAG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6M_019 not in the Motif Atlas
- Homologous match to J3_6PRV_001
- Geometric discrepancy: 0.4339
- The information below is about J3_6PRV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.5
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V6M|1|B8|G|1055
4V6M|1|B8|G|1056
4V6M|1|B8|A|1057
*
4V6M|1|B8|U|1081
4V6M|1|B8|U|1082
4V6M|1|B8|U|1083
4V6M|1|B8|A|1084
4V6M|1|B8|A|1085
4V6M|1|B8|A|1086
4V6M|1|B8|G|1087
*
4V6M|1|B8|C|1102
4V6M|1|B8|A|1103
4V6M|1|B8|C|1104
Current chains
- Chain B8
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B4
- 50S ribosomal protein L36
- Chain BI
- 50S ribosomal protein L11
Coloring options: